E. coli bacteria more capable at evolving antibiotic resistance than previously thought: Study

The real-world implications are significant. If rugged landscapes like this are common in biological systems, it could mean that many adaptive processes, such as antibiotic resistance, may be more accessible than previously thought, the study states

E. coli bacteria may be far more capable at evolving antibiotic resistance than scientists previously thought, according to a new study.

Led by the Santa Fe Institute’s external professor Andreas Wagner, the researchers experimentally mapped more than 260,000 possible mutations of an E. coli protein that is essential for the bacteria’s survival when exposed to the antibiotic trimethoprim.

Over the course of thousands of highly realistic digital simulations, the researchers then found that 75 per cent of all possible evolutionary paths of the E. coli protein ultimately endowed the bacteria with such a high level of antibiotic resistance that a clinician would no longer give the antibiotic trimethoprim to a patient.

“In essence, this study suggests that bacteria like E. coli may be more adept at evolving resistance to antibiotics than we initially thought, and this has broader implications for understanding how various systems in evolutionary biology, chemistry, and other fields adapt and evolve,” said Wagner, an evolutionary biologist at the University of Zurich in Switzerland.

Besides uncovering new and potentially worrisome findings about antibiotic resistance, the researchers’ work also casts doubt on a longstanding theory about fitness landscapes.

These genetic maps represent how well an organism — or a part of it, like a protein — adapts to its environment, said the study published in Science.

Wagner and colleagues used CRISPR gene editing technology to create one of the most combinatorially complete fitness landscapes to date for the E. coli dihydrofolate reductase (DHFR) protein.

What they found was surprising. The fitness landscape had many peaks, but most were of low fitness, making them less interesting for adaptation.

However, even in this rugged landscape, about 75 per cent of the populations they simulated reached high fitness peaks, which would grant E. coli high antibiotic resistance.

The real-world implications are significant. If rugged landscapes like this are common in biological systems, it could mean that many adaptive processes, such as antibiotic resistance, may be more accessible than previously thought.

“This has profound implications not only in biology but beyond, prompting us to reevaluate our understanding of landscape evolution across various fields,” Wagner said.

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